Professor Alex Dumbrell

Zinger, L., Bonin, A., Alsos, IG., Bálint, M., Bik, H., Boyer, F., Chariton, AA., Creer, S., Coissac, E., Deagle, BE., De Barba, M., Dickie, IA., Dumbrell, AJ., Ficetola, GF., Fierer, N., Fumagalli, L., Gilbert, MTP., Jarman, S., Jumpponen, A., Kauserud, H., Orlando, L., Pansu, J., Pawlowski, J., Tedersoo, L., Thomsen, PF., Willerslev, E. and Taberlet, P., (2019). DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions. Molecular Ecology. 28 (8), 1857-1862

Maček, I., Clark, DR., Šibanc, N., Moser, G., Vodnik, D., Müller, C. and Dumbrell, AJ., (2019). Impacts of long‐term elevated atmospheric CO₂ concentrations on communities of arbuscular mycorrhizal fungi. Molecular Ecology. 28 (14), 3445-3458

Clark, DR., Ferguson, RMW., Harris, DN., Matthews Nicholass, KJ., Prentice, HJ., Randall, KC., Randell, L., Warren, SL. and Dumbrell, AJ., (2018). Streams of data from drops of water: 21st century molecular microbial ecology. WIREs Water. 5 (4), e1280-e1280

Mommer, L., Cotton, TEA., Raaijmakers, JM., Termorshuizen, AJ., van Ruijven, J., Hendriks, M., van Rijssel, SQ., van de Mortel, JE., van der Paauw, JW., Schijlen, EGWM., Smit-Tiekstra, AE., Berendse, F., de Kroon, H. and Dumbrell, AJ., (2018). Lost in diversity: the interactions between soil-borne fungi, biodiversity and plant productivity. New Phytologist. 218 (2), 542-553

Garcia-Alcega, S., Nasir, ZA., Ferguson, R., Noël, C., Cravo-Laureau, C., Whitby, C., Dumbrell, AJ., Colbeck, I., Tyrrel, S. and Coulon, F., (2018). Can chemical and molecular biomarkers help discriminate between industrial, rural and urban environments?. Science of the Total Environment. 631–632, 1059-1069

Steinke, M., Randell, L., Dumbrell, AJ. and Saha, M., (2018). Volatile Biomarkers for Aquatic Ecological Research. NEXT GENERATION BIOMONITORING, PT 2. 59, 75-92

Bohan, DA., Vacher, C., Tamaddoni-Nezhad, A., Raybould, A., Dumbrell, AJ. and Woodward, G., (2017). Next-Generation Global Biomonitoring: Large-scale, Automated Reconstruction of Ecological Networks. Trends in Ecology & Evolution. 32 (7), 477-487

Garcia-Alcega, S., Nasir, ZA., Ferguson, R., Whitby, C., Dumbrell, AJ., Colbeck, I., Gomes, D., Tyrrel, S. and Coulon, F., (2017). Fingerprinting outdoor air environment using microbial volatile organic compounds (MVOCs) – A review. TrAC - Trends in Analytical Chemistry. 86, 75-83

Terrisse, F., Cravo-Laureau, C., Noël, C., Cagnon, C., Dumbrell, AJ., McGenity, TJ. and Duran, R., (2017). Variation of oxygenation conditions on a hydrocarbonoclastic microbial community reveals Alcanivorax and Cycloclasticus ecotypes. Frontiers in Microbiology. 8 (AUG), 1549-

Clark, DR., Mathieu, M., Mourot, L., Underwood, GJC., Dufossé, L., Dumbrell, AJ. and McGenity, TJ., (2017). Biogeography at the limits of life: Do extremophilic microbial communities show biogeographical regionalization?. Global Ecology and Biogeography. 26 (12), 1435-1446

Osburn, CL., Anderson, NJ., Stedmon, CA., Giles, ME., Whiteford, EJ., McGenity, TJ., Dumbrell, AJ. and Underwood, GJC., (2017). Shifts in the Source and Composition of Dissolved Organic Matter in Southwest Greenland Lakes Along a Regional Hydro-climatic Gradient. Journal of Geophysical Research: Biogeosciences. 122 (12), 3431-3445

Dumbrell, ALEXJ., Ferguson, RMW. and Clark, DR., (2017). Microbial Community Analysis by Single-Amplicon High-Throughput Next Generation Sequencing: Data Analysis – From Raw Output to Ecology. Hydrocarbon and Lipid Microbiology Protocols. Microbial Quantitation, Community Profiling and Array Approaches, 155-206

Lohr, KE., Smith, DJ., Suggett, DJ., Nitschke, MR., Dumbrell, AJ., Woodcock, S. and Camp, EF., (2017). Coral community structure and recruitment in seagrass meadows. Frontiers in Marine Science. 4 (NOV)

Camp, EF., Hobbs, JPA., De Brauwer, M., Dumbrell, AJ. and Smith, DJ., (2016). Cohabitation promotes high diversity of clownfishes in the Coral Triangle. Proceedings of the Royal Society B: Biological Sciences. 283 (1827), 20160277-20160277

Low-Décarie, E., Fussmann, GF., Dumbrell, AJ. and Bell, G., (2016). Communities that thrive in extreme conditions captured from a freshwater lake. Biology Letters. 12 (9), 20160562-20160562

Aslam, SN., Dumbrell, AJ., Sabir, JS., Mutwakil, MHZ., Baeshen, MMN., Abo-Aba, SEM., Clark, DR., Yates, SA., Baeshen, NA., Underwood, GJC. and McGenity, TJ., (2016). Soil compartment is a major determinant of the impact of simulated rainfall on desert microbiota. Environmental Microbiology. 18 (12), 5048-5062

Lansdown, K., McKew, BA., Whitby, C., Heppell, CM., Dumbrell, AJ., Binley, A., Olde, L. and Trimmer, M., (2016). Importance and controls of anaerobic ammonium oxidation influenced by riverbed geology. Nature Geoscience. 9 (5), 357-360

Thompson, MSA., Bankier, C., Bell, T., Dumbrell, AJ., Gray, C., Ledger, ME., Lehmann, K., McKew, BA., Sayer, CD., Shelley, F., Trimmer, M., Warren, SL. and Woodward, G., (2016). Gene-to-ecosystem impacts of a catastrophic pesticide spill: testing a multilevel bioassessment approach in a river ecosystem. Freshwater Biology. 61 (12), 2037-2050

Dumbrell, AJ., Kordas, RL. and Woodward, G., (2016). ADVANCES IN ECOLOGICAL RESEARCH Large-Scale Ecology: Model Systems to Global Perspectives PREFACE. ADVANCES IN ECOLOGICAL RESEARCH, VOL 55: LARGE-SCALE ECOLOGY: MODEL SYSTEMS TO GLOBAL PERSPECTIVES. 55, XIX-XXIV

(2016). Networking Our Way to Better Ecosystem Service Provision. Trends in Ecology & Evolution. 31 (2), 105-115

Fayle, TM., Scholtz, O., Dumbrell, AJ., Russell, S., Segar, ST. and Eggleton, P., (2015). Detection of Mitochondrial COII DNA Sequences in Ant Guts as a Method for Assessing Termite Predation by Ants. PLOS ONE. 10 (4), e0122533-e0122533

Cotton, TEA., Fitter, AH., Miller, RM., Dumbrell, AJ. and Helgason, T., (2015). Fungi in the future: interannual variation and effects of atmospheric change on arbuscular mycorrhizal fungal communities. New Phytologist. 205 (4), 1598-1607

Li, J., Nedwell, DB., Beddow, J., Dumbrell, AJ., McKew, BA., Thorpe, EL. and Whitby, C., (2015). amoAGene Abundances and Nitrification Potential Rates Suggest that Benthic Ammonia-Oxidizing Bacteria and Not Archaea Dominate N Cycling in the Colne Estuary, United Kingdom. Applied and Environmental Microbiology. 81 (1), 159-165

Low-Décarie, E., Kolber, M., Homme, P., Lofano, A., Dumbrell, A., Gonzalez, A. and Bell, G., (2015). Community rescue in experimental metacommunities. Proceedings of the National Academy of Sciences. 112 (46), 14307-14312

Papaspyrou, S., Smith, CJ., Dong, LF., Whitby, C., Dumbrell, AJ. and Nedwell, DB., (2014). Nitrate Reduction Functional Genes and Nitrate Reduction Potentials Persist in Deeper Estuarine Sediments. Why?. PLoS ONE. 9 (4), e94111-e94111

Cotton, TEA., Dumbrell, AJ. and Helgason, T., (2014). What Goes in Must Come out: Testing for Biases in Molecular Analysis of Arbuscular Mycorrhizal Fungal Communities. PLoS ONE. 9 (10), e109234-e109234

Šibanc, N., Dumbrell, AJ., Mandić-Mulec, I. and Maček, I., (2014). Impacts of naturally elevated soil CO2 concentrations on communities of soil archaea and bacteria. Soil Biology and Biochemistry. 68, 348-356

Woodward, G., Dumbrell, AJ., Baird, DJ. and Hajibabaei, M., (2014). ADVANCES IN ECOLOGICAL RESEARCH Big Data in Ecology PREFACE. ADVANCES IN ECOLOGICAL RESEARCH, VOL 51: BIG DATA IN ECOLOGY. 51, IX-XIII

Talmy, D., Blackford, J., Hardman-Mountford, NJ., Dumbrell, AJ. and Geider, RJ., (2013). An optimality model of photoadaptation in contrasting aquatic light regimes. Limnology and Oceanography. 58 (5), 1802-1818

Codling, EA. and Dumbrell, AJ., (2013). Bridging the gap between theory and data in ecological models. Ecological Complexity. 16, 1-8

Lewis, HM. and Dumbrell, AJ., (2013). Evolutionary games of cooperation: Insights through integration of theory and data. Ecological Complexity. 16, 20-30

McKew, BA., Dumbrell, AJ., Taylor, JD., McGenity, TJ. and Underwood, GJC., (2013). Differences between aerobic and anaerobic degradation of microphytobenthic biofilm-derived organic matter within intertidal sediments. FEMS Microbiology Ecology. 84 (3), 495-509

McKew, BA., Dumbrell, AJ., Daud, SD., Hepburn, L., Thorpe, E., Mogensen, L. and Whitby, C., (2012). Characterization of Geographically Distinct Bacterial Communities Associated with Coral Mucus Produced by Acropora spp. and Porites spp.. Applied and Environmental Microbiology. 78 (15), 5229-5237

Fayle, TM., Edwards, DP., Turner, EC., Dumbrell, AJ., Eggleton, P. and Foster, WA., (2012). Public goods, public services and by-product mutualism in an ant-fern symbiosis. Oikos. 121 (8), 1279-1286

Codling, EA. and Dumbrell, AJ., (2012). Mathematical and theoretical ecology: linking models with ecological processes. Interface Focus. 2 (2), 144-149

Maček, I., Dumbrell, AJ., Nelson, M., Fitter, AH., Vodnik, D. and Helgason, T., (2011). Local Adaptation to Soil Hypoxia Determines the Structure of an Arbuscular Mycorrhizal Fungal Community in Roots from Natural CO2Springs. Applied and Environmental Microbiology. 77 (14), 4770-4777

Dumbrell, AJ., Ashton, PD., Aziz, N., Feng, G., Nelson, M., Dytham, C., Fitter, AH. and Helgason, T., (2011). Distinct seasonal assemblages of arbuscular mycorrhizal fungi revealed by massively parallel pyrosequencing. New Phytologist. 190 (3), 794-804

Fayle, TM., Dumbrell, AJ., Turner, EC. and Foster, WA., (2011). Distributional Patterns of Epiphytic Ferns are Explained by the Presence of Cryptic Species. Biotropica. 43 (1), 6-7

Mommer, L., Dumbrell, AJ., Wagemaker, CAM. and Ouborg, NJ., (2011). Belowground DNA-based techniques: untangling the network of plant root interactions. Plant and Soil. 348 (1-2), 115-121

Dumbrell, AJ., Nelson, M., Helgason, T., Dytham, C. and Fitter, AH., (2010). Erratum: Relative roles of niche and neutral processes in structuring a soil microbial community. The ISME Journal. 4 (8), 1078-1078

Dumbrell, AJ., Nelson, M., Helgason, T., Dytham, C. and Fitter, AH., (2010). Idiosyncrasy and overdominance in the structure of natural communities of arbuscular mycorrhizal fungi: is there a role for stochastic processes?. Journal of Ecology. 98 (2), 419-428

Dumbrell, AJ., Nelson, M., Helgason, T., Dytham, C. and Fitter, AH., (2010). Relative roles of niche and neutral processes in structuring a soil microbial community. The ISME Journal. 4 (3), 337-345

Fayle, TM., Chung, AYC., Dumbrell, AJ., Eggleton, P. and Foster, WA., (2009). The Effect of Rain Forest Canopy Architecture on the Distribution of Epiphytic Ferns (Aspleniumspp.) in Sabah, Malaysia. Biotropica. 41 (6), 676-681

Dumbrell, AJ., Clark, EJ., Frost, GA., Randell, TE., Pitchford, JW. and Hill, JK., (2008). Changes in species diversity following habitat disturbance are dependent on spatial scale: theoretical and empirical evidence. Journal of Applied Ecology. 45 (5), 1531-1539

Wüster, W., Dumbrell, AJ., Hay, C., Pook, CE., Williams, DJ. and Fry, BG., (2005). Snakes across the Strait: trans-Torresian phylogeographic relationships in three genera of Australasian snakes (Serpentes: Elapidae: Acanthophis, Oxyuranus, and Pseudechis). Molecular Phylogenetics and Evolution. 34 (1), 1-14

Dumbrell, AJ. and Hill, JK., (2005). Impacts of selective logging on canopy and ground assemblages of tropical forest butterflies: Implications for sampling. Biological Conservation. 125 (1), 123-131

Woodward, G., Dumbrell, AJ., Baird, DJ. and Hajibabaei, M., (2014). Preface. Elsevier. 9780080999708

Woodward, G., Dumbrell, AJ., Baird, DJ. and Hajibabaei, M., (2014). Big Data in Ecology. Elsevier. 978-0-08-099970-8

Nedwell, DB., Underwood, GJC., McGenity, TJ., Whitby, C. and Dumbrell, AJ., (2016). The Colne Estuary. In: Advances in Ecological Research. Elsevier. 227- 281. 9780081009352

Jackson, MC., Weyl, OLF., Altermatt, F., Durance, I., Friberg, N., Dumbrell, AJ., Piggott, JJ., Tiegs, SD., Tockner, K., Krug, CB., Leadley, PW. and Woodward, G., (2016). Recommendations for the Next Generation of Global Freshwater Biological Monitoring Tools. In: Advances in Ecological Research. Elsevier. 615- 636. 9780081009352

Maček, I., Vodnik, D., Pfanz, H., Low-Décarie, E. and Dumbrell, AJ., (2016). Locally Extreme Environments as Natural Long-Term Experiments in Ecology. In: Advances in Ecological Research. Elsevier. 283- 323. 9780081009352

Woodward, G., Dumbrell, AJ., Baird, DJ. and Hajibabaei, M., (2014). Preface - Big Data in Ecology. In: Big Data in Ecology. Editors: Woodward, G., Dumbrell, AJ., Baird, DJ. and Hajibabaei, M., . Elsevier. ix- xiii. 978-0-08-099970-8

Dumbrell, AJ., (2013). Arbuscular Mycorrhizal Fungi throughout the Year: Using Massively Parallel Pyrosequencing to Quantify Spatiotemporal Seasonal Dynamics. In: Molecular Microbial Ecology of the Rhizosphere. John Wiley & Sons, Inc.. 1113- 1122. 9781118296172