RCR Group XI Rep protein alignment
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RCR group XI database | RCR alignments | RCR phylogenies
CLUSTAL W (1.8) multiple sequence alignment
pDU1 MISPESLNTNVSLTLLTRELQTEIILGTYTVRVHTRIGRE-PCARLWYLCRALDKDGSGH 59
pFdA ----MKHTTFPHSNIIAQSTATEGENFVLQTRLHASILLLTPASKLWYLCRALDLSGRGY 56
. .* .::::. ** . .*:*: * *.::********* .* *:
pDU1 LTLPLPVVQTFLDCSDKSVYRWLQDGKKIGAFRRYKIKAGMITVYLGGMFQVCYNLNLKR 119
pFdA VVLSPQNLELLQEKKS-TIYRWLKDGKDLGLFRCYSWAGNTLKISLGSLWRACKKARIKN 115
:.*. :: : : .. ::****:***.:* ** *. .. :.: **.:::.* : .:*.
pDU1 WGDVA-VVPLVQVLS--DLRSLTTGIVTQSFQQKSRYAANRQLKPEYRKLFGAPHPNELV 176
pFdA WGTVANNIPLEEILKNNGRRTVATAMTIQDWQERSRYAAKNQLNPLERKCFEIPATADVL 175
** ** :** ::*. . *:::*.:. *.:*::*****:.**:* ** * * . :::
pDU1 KDTRQSSLKSPEGEVPCVLHISSSRIFVSKSFIHYGTSQKAVSCELG-------IHKRTV 229
pFdA TP--QTSPKLTSGGTTGVLHVGEKRIFVGRSFIPFGVSQKRISNELNSQPASCGVSVRTV 233
. *:* * ..* .. ***:...****.:*** :*.*** :* **. : ***
pDU1 RRHQKQLGMNRRQLCQAKIEYNQLRHARNNDASEFWAFTGTKTDIGYQVMGDAVVFSDGI 289
pFdA QRHVERLEVKHRQLMQARREYREIAHRIKQGATSWQCKSDADISFTWGNQPDEIVLHERN 293
:** ::* :::*** **: **.:: * ::.*:.: . :.:. .: : * :*: :
pDU1 APGAKKRQPNTYQIDATEFDGRLFKVGDKVFMNRCNIYREQFTLTTMSAARRKYHFKLSQ 349
pFdA GKSSARREG-----GHTIKLDQLCNYSNTHWRYRCNLYLLSYELTSMRTTRYQWKKRGLN 348
. .: :*: . * .:* : .:. : ***:* .: **:* ::* ::: : :
pDU1 CHFS--ENRAGRVGNRFVIGCHSGEI--------------------- 373
pFdA VKIAPVENCPSEISPQTPEMLESPKLHAEGRGLGGQNKSVKNENPRK 395
::: ** ...:. : .* ::
KEY
| A V F P M I L W | RED | Small (small+ hydrophobic (incl.aromatic -Y)) |
| D E | BLUE | Acidic |
| R H K | MAGENTA | Basic |
| S T Y H C N G Q | GREEN | Hydroxyl + Amine + Basic - Q |
| Others | Gray |
The consensus line:
"*" = identical or conserved residues in all sequences in the alignment
":" = indicates conserved substitutions
"." = indicates semi-conserved substitutions.