The Open Ocean Coastal and Freshwater Environmental Microbiology

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2008 Publications

 

Aburto, A., Fahy, A, Coulon, F, Lethbridge, G., Ball, A.S., Timmis, K.N. and McGenity, T.J. 2008 Mixed aerobic and anaerobic microbial communities in benzene-contaminated groundwater. Journal of Applied Microbiology In Press.

Brunner, B., Yu, J-Y., Mielke, R.E., MacAskill, J.A., Madzunkov, S., McGenity T.J. and Coleman, M.L. 2008. Different isotope and chemical patterns of pyrite oxidation related to lag and exponential growth phases of Acidithiobacillus ferrooxidans reveal a microbial growth strategy. Earth and Planetary Science Letters 270: 63-72.

Bunting, S.W. 'Horizontally integrated aquaculture development: exploring consensus on constraints and opportunities with a stakeholder Delphi'. Aquaculture International. In press. [doi:10.1007/s10499-007-9134-x].

Bunting, S.W. 'Assessing the stakeholder Delphi for facilitating interactive participation and consensus building for sustainable aquaculture development'. Society & Natural Resources. In press.

Codling, E.A. 2008, 'Individual-based movement behaviour in a simple marine reserve-fishery system: why predictive models should be handled with care'. Hydrobiologia, Vol. 66, pp. 55-61.

Codling, E.A., M.J. Plank and S. Benhamou, 2008, 'Random walk models in biology' (Review). Journal of the Royal Society Interface. Vol. 5, pp. 813–834

Davey M., Tarran G.A., Mills, M.M., Ridame, C., Geider, R.J., La Roche, J., 2008. Nutrient limitation of picophytoplankton photosynthesis and growth in the eastern tropical North Atlantic. Limnology & Oceanography. 42: 1722-1733.

Duce R.A., LaRoche J., Altieri KI., Arrigo K.R., Baker A.R., Capone D.G., Cornell S., Dentener F., Galloway J., Ganeshram R.S. Geider R.J., Jickells T., Kuypers M.M., Langlois R., Liss P.S., Liu S.M., Middelburg J.J., Moore C.M, Nickovic S., Oschlies A., Pedersen T., Prospero J., Schlitzer R., Seitzinger S., Sorensen L.L., Uematsu M., Ulloa O.,Voss M., Ward B., Zamora1 L. 2008. Impacts of Atmospheric Anthropogenic Nitrogen on the Open Ocean. Science 320: 893-897

Fahy, A., Ball, A.S., Lethbridge, G., McGenity, T.J., Timmis, K.N. 2008. High concentrations of benzene can favour Gram-positive microorganisms in groundwaters from a contaminated aquifer. FEMS Microbiology Ecology 65: 526-533.

Fahy, A., Ball, A.S., Lethbridge, G., Timmis, K.N., McGenity, T.J. 2008. Isolation of alkali-tolerant benzene-degrading bacteria from a contaminated aquifer. Letters in Applied Microbiology 47: 60-66.

Hennige, S.J., D.J. Smith, R. Perkins, M. Consalvey, D.M. Patterson and D.J. Suggett, 2008, 'Photoacclimation, growth and distribution of massive coral species in clear and turbid waters.' Marine Ecology Progress Series. Vol. 365. In press.

Jickells, T.D., P.S. Liss, W. Broadgate, S. Turner, A.J. Kettle, J. Read, J. Baker, L. M. Cardenas, F. Carse, M. Hamren-Larssen, L. Spokes, M. Steinke, A. Thompson, A. Watson, S.D. Archer, R.G.J. Bellerby, C.S. Law, P.D. Nightingale, M.I. Liddicoat, C.E. Widdicombe, A. Bowie, L.C. Gilpin, G. Moncoiffé, G. Savidge, T. Preston, P. Hadziabdic, T. Frost, R. Upstill-Goddard, C. Pedrós-Alió, R. Simó, A. Jackson, A. Allen and M.D. DeGrandpre, 2008, 'A Lagrangian biogeochemical study of an eddy in the Northeast Atlantic'. Progress in Oceanography, Vol. 76, pp. 366-398.

McGenity, T.J., Hallsworth, J.E. and Timmis, K.N. 2008. Connectivity between ‘ancient’ and ‘modern’ hypersaline environments, and the salinity limits of life. CIESM Workshop Monographs n°33: The Messinian Salinity Crisis from mega-deposits to microbiology – A consensus report. Almeria (Spain), 7-10 November 2007, 168 p. (439 refs). pp. 115-120.

Mills, M.M., Moore, C.M., Languois, R., Milne, A., Achterberg, E.P., K. Nachtigall, Lochte, K., Geider, R.J. & La Roche, J. 2008. Nitrogen and phosphorus co-limitation of bacterial productivity in the oligotrophic subtropical North Atlantic. Limnology & Oceanography 53: 824-834

Moore, C.M., Mills, M.M., Languois, R., Milne, A., Achterberg, E.P., La Roche, J. & Geider, R.J. 2008. Relative influence of nitrogen and phosphorous availability on phytoplankton physiology and productivity in the oligotrophic sub-tropical North Atlantic Ocean. Limnology & Oceanography 53: 291-305

Perry, C.T.P. and Hepburn, L.J. (2008) Syn-depositional alteration of coral reef framework through bioerosion, encrustation and cementation: Taphonomic signatures of reef accretion and reef depositional events. Earth Science Reviews 86: 106-144

Pilgrim, S.E., L.C. Cullen, D.J. Smith and J. Pretty, 2008, 'Ecological knowledge is lost in wealthier communities and countries'. Environmental Science and Technology, Vol. 42, pp. 1002-1009.

Paisse, S., Coulon, F., Goñi-Urriza, M.S., Peperzak, L., McGenity, T.J., Duran, R. 2008. Structure of bacterial communities along a hydrocarbon contamination gradient in coastal sediment. FEMS Microbiology Ecology In Press.

Prasil, O., D.J. Suggett, J.J. Cullen, M. Babin and Govindjee, 2008, 'Aquafluo 2007: chlorophyll fluorescence in aquatic sciences' an international conference held in Nové Hrady. Photosynth. Res. Vol. 95, pp. 111-115.

Ragni, M., Airs R., Leonardos, N., Archer, S. &, Geider, R.J., 2008. Photoinhibition of PSII in Emiliania huxleyi (Haptophyta) under high light stress: the roles of photoacclimation, photoprotection and photorepair. Journal of Phycology 44: 670-683.

Ross, O., C.M. Moore, D.J. Suggett, H.L. MacIntyre & R.J. Geider, 2008, 'A model of photosynthesis and photo-protection based on reaction center damage and repair.' Limnology & Oceanography. Vol. 53, pp. 1835-1852.

Sass, A.M., McKew, B.A., Sass, H., Fichtel, J., Timmis, K.N., McGenity, T.J. 2008. Diversity of Bacillus-like organisms isolated from deep-sea hypersaline anoxic sediments. Saline Systems 4:8.

Smith, B.E., Lewis, A., Belt, S., Whitby, C. & Rowland, S.J. 2008. Effects of alkyl chain branching on the biotransformation of naphthenic acids. Environmental Science and Technology (in press).

Suggett, D.J., and C.M. Moore, 2008, 'Fluorescence for biological sensing.' Encyclopaedia for Marine Sciences, Elsevier.

Suggett, D.J., M. Warner, D.J. Smith, P. Davey, S. Hennige and N.R. Baker, 2008, 'Photosynthesis and production of hydrogen peroxide by symbiotic dinoflagellates during short-term heat stress.' J. Phycology. Vol. 45: 948-956.

Unsworth, R.F.K., P.S. De Leon, S.L. Garrard, J. Jompa, D.J. Smith and J.J. Bell, 2008, 'High connectivity of Indo-Pacific seagrass fish assemblages with mangrove and coral reef habitats.' Marine Ecology Progress Series. Vol. 353, pp. 213-224.

Večeřa, Z., P. Mikuška, J. Smolík, K. Eleftheriadis, C. Bryant, I. Colbeck and M. Lazaridis. 2008. ‘Shipboard measurements of nitrogen dioxide, nitrous acid, nitric acid and ozone in the Eastern Mediterranean Sea’, Water, Air and Soil Pollution: Focus. 8: 117–125.

Vogt, M., M. Steinke, S. Turner, A. Paulino, M. Meyerhöfer, U. Riebesell, C. LeQuéré and P. Liss, 2008, 'Dynamics of dimethylsulphoniopropionate and dimethylsulphide under different CO2 concentrations during a mesocosm experiment'. Biogeosciences, Vol. 5, pp.407-419.

Vogt, M., S. Turner, N. Yassaa, M. Steinke, J. Williams and P. Liss. 2008. Laboratory inter-comparison of dissolved dimethyl sulphide (DMS) measurements using purge-and-trap and solid-phase microextraction techniques during a mesocosm experiment. Marine Chemistry 108: 32-39.