The Open Ocean Coastal and Freshwater Environmental Microbiology

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2007 Publications

 

Bell, T.G., G. Malin, Y.-N. Kim and M. Steinke.  2007. Spatial variability in DMSP-lyase activity along an Atlantic meridional transect. Aquatic Sciences 69: 320-329.

S.W. Bunting.  2007. Confronting the realities of wastewater aquaculture in peri-urban Kolkata with bioeconomic modelling. Water Research. In press.

S.W. Bunting.  2007. Regenerating aquaculture: enhancing aquatic resources management, livelihoods and conservation. In Pretty, J., Ball, A., Benton, T., Guivant, J., Lee, D., Orr, D., Pfeffer, M., Ward, H. (Eds.), SAGE Handbook on Environment and Society. SAGE Publications. In press.

Carballo, J.L., L.J. Hepburn, H.H. Nava, J.A. Cruz-Barraza, and E. Bautista-Guerrero,  2007. Coral boring Aka-species (Porifera: Phloeodictyidae) from Mexico with description of Aka cryptica sp. nov. Journal of the Marine Biological Association. 87, 1477-1484.

Codling, E.A., J.W. Pitchford, and S.D. Simpson, 2007. Group navigation and the 'many wrongs principle' in models of animal movement. Ecology 88: 1864-1870.

Coulon F., B.A. McKew, A.M. Osborn, T.J. McGenity and K.N. Timmis. 2007. Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology 9: 177-186.

Cullen, L., J. Pretty, D.J. Smith and S.P. Pilgrim. 2007.  Links Between Local Ecological Knowledge and Wealth in Indigenous Communities of Indonesia: Implications for Conservation of Marine Resources. The International Journal of Interdisciplinary Social Sciences 2: 289-299

Hallsworth, J.E., M.M. Yakimov, P.N. Golyshin, J.L.M. Gillion, G. D'Auria, F. de Lima Alves, V. La Cono, M. Genovese, B.A. McKew, S.L. Hayes, G. Harris, L. Giuliano, K.N. Timmis and T.J. McGenity. 2007. Limits of life in MgCl2-containing environments: chaotropicity defines the window. Environmental Microbiology 9: 801-813.

Haapkyla, J., A.S. Seymour, J. Trebilco and D.J. Smith. 2007.  Coral disease prevalence and coral health in the Wakatobi Marine Park, South-East Sulawesi, Indonesia. Journal of the Marine Biology Association of the UK 87: 1-12.

Haynes, K. T.A. Hofmann, C.J. Smith, A.S. Ball, G.J.C. Underwood and A.M. Osborn, 2007. Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied Environmental Microbiology 73: 6112-6124.

Jickells, T.D., P.S. Liss, W. Broadgate, S. Turner, A.J. Kettle, J. Read, J. Baker, L. M. Cardenas, F. Carse, M. Hamren-Larssen, L. Spokes, M. Steinke, A. Thompson, A. Watson, S.D. Archer, R.G.J. Bellerby, C.S. Law, P.D. Nightingale, M.I. Liddicoat, C.E. Widdicombe, A. Bowie, L.C. Gilpin, G. Moncoiffé, G. Savidge, T. Preston, P. Hadziabdic, T. Frost, R. Upstill-Goddard, C. Pedrós-Alió, R. Simó, A. Jackson, A. Allen, M.D. DeGrandpre.  2007. A Lagrangian Biogeochemical Study of an Eddy in the Northeast Atlantic. Progress in Oceanography. In press.

McKew B.A., F. Coulon, A.M. Osborn, K.N. Timmis and T.J. McGenity. 2007. Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology 9: 165-176.

McKew B.A., F. Coulon, M.M. Yakimov, R. Denaro, M. Genovese, C.J. Smith, A.M. Osborn, K.N. Timmis and T.J. McGenity. 2007. Efficacy of intervention strategies for bioremediation of crude oil in marine systems and effects on indigenous hydrocarbonoclastic bacteria. Environmental Microbiology 9: 1562-1571.

Miller, L., D.J. Smith, and G.J.C. Underwood. 2007. Identification of specific sources of faecal contamination within shellfisheries. Shellfish News 23: 8-11.

Nejstgaard, J.C., K.W. Tang, M. Steinke, J. Dutz, M. Koski, E. Antajan and J. Long.  2007. Zooplankton grazing on Phaeocystis: a quantitative review and future challenges. Biogeochemistry 83: 147-172.

Nizzoli, D., M. Bartoli, M. Cooper, D.T. Welsh, G.J.C. Underwood and P. Viaroli. 2007. Implications for oxygen, nutrient fluxes and denitrification rates during the early stage of sediment colonisation by the polychaete Nereis spp. in four estuaries. Estuarine, Coastal and Shelf Science 75: 125 -134.

Perry, C.T. and L.J. Hepburn. 2007. Syn-depositional alteration of coral reef framework through bioerosion, encrustation and cementation: Taphonomic signatures of reef accretion and reef depositional events. Earth Science Reviews. In press.

Pilgrim, S.E., D.J. Smith and J. Pretty. 2007. A cross-regional quantitative assessment of the factors affecting ecoliteracy: Policy and practice implications. Ecological Applications. 17: 1742-1751.

Pilgrim, S.E.,  L. Cullen, D.J. Smith, and J. Pretty. 2007. Hidden Harvest or Hidden Revenue? The effect of economic development pressures on local resource use in a remote region of southeast Sulawesi, Indonesia. Indian Journal of Traditional Knowledge 6: 150-159.

Pohnert, G., M. Steinke, and R. Tollrian.  2007. The role of chemical cues and defence metabolites in shaping pelagic interspecific interactions. Trends in Ecology and Evolution 22: 198-204.

Prasil, O., D.J. Suggett, J.J. Cullen, M. Babin, M. Govindjee. 2007. Aquafluo 2007: chlorophyll fluorescence in aquatic sciences, an international conference held in Nove Hrady. Photosynthesis Research 94. In press.

Smith, D.J. and S. McMellor.  2007. Coral Reefs of the Red Sea. Natural Resources and Cultural Connections of the Red Sea. BAR International Series. 63-74.

Smith D.J., S. Pilgrim and L. Cullen. 2007. Coral Reefs and People. Chapter 35. In Pretty, J., Ball, A., Benton, T., Guivant, J., Lee, D., Orr, D., Pfeffer, M., Ward, H. (Eds.), SAGE Handbook on Environment and Society. SAGE, London.

Stefels, J., M. Steinke, S. Turner, G. Malin, S. and Belviso S., 2007. Environmental constraints on the production and removal of the climatically active gas dimethylsulphide (DMS) and implications for ecosystem modelling. Biogeochemistry 83: 245-275.

Steinke, M., C. Evans, G.A. Lee, and G. Malin.  2007. Substrate kinetics of DMSP-lyases in axenic cultures and mesocosm populations of Emiliania huxleyi. Aquatic Sciences 69: 352-359.

Suggett D.J., H.E. Le Floc’, G.N. Harris, N. Leonardos and R.J. Geider. 2007. Different strategies of photoacclimation by two strains of Emiliania huxleyi (Haptophyta). J. Phycology 43. In press.

Thornton, D.C.O., L.F. Dong, G.J.C. Underwood and D.B. Nedwell. 2007. Sediment-water inorganic nutrient exchange and nitrogen budgets in the Colne estuary (UK). Marine Ecology Progress Series. 337: 63 – 77

Todd, J.D., R. Rogers, Y.-G. Li, M. Wexler, P. L. Bond, S. Lei, G. Malin, M. Steinke and A.W.B. Johnston.  2007. Structural and regulatory genes required to make the gas dimethyl sulfide in bacteria. Science 315: 666-669.

Unsworth R.K.F., J.J. Bell and D.J. Smith. 2007. Tidal fish connectivity of reef and seagrass habitats in the Indo-Pacific. Journal of the Marine Biological Association UK 87: 1287-1296.

Unsworth, R.K.F., S. Garrard, P. Salinas de Leon D.J. Smith and J.J. Bell. 2007. Ontogeny of Lethrinus harak (Forsskål, 1775) in an Indo-Pacific coastal seascape. Journal of Fish Biology. In press.

Unsworth, R.K.F., J. Jompa, S. DeGrave, J. Bell and D.J. Smith. 2007. The role of habitat complexity in structuring seagrass faunal communities. Marine and Freshwater Research 58. In press.
           
Unsworth R.K.F., A. Powell, F. Hukom and D.J. Smith. 2007. The effectiveness of small scale 'No-take Areas' as tools in conservation management of locally exploited coral reef fisheries. Marine Biology 1152: 243-254

Unsworth R.K.F., J.D. Taylor, A. Powell, J. Bell and D.J. Smith. 2007. The contribution of scarid herbivory to seagrass ecosystem dynamics in the Indo-Pacific. Estuarine, Coastal and Shelf Science 74: 53-62

Unsworth R.K.F., P. Salinas De Leon, S. Garrard, J. Jompa, D.J. Smith and J.J. Bell. 2007. High connectivity of Indo-Pacific seagrass fish assemblages with mangrove and coral reef habitats. Marine Ecology Progress Series. In Press

Unsworth R.K.F., E. Wylie, D.J. Smith and J.J. Bell. 2007. Diel trophic structuring of seagrass bed fish assemblages in the Wakatobi Marine National Park, Indonesia. Estuarine, Coastal and Shelf Science. 72: 81-88.

Vogt, M., S. Turner, N. Yassaa, M. Steinke, J. Williams and P. Liss.  2007. Laboratory inter-comparison of dissolved dimethyl sulphide (DMS) measurements using purge-and-trap and solid-phase microextraction techniques during a mesocosm experiment. Marine Chemistry (accepted Oct. 07).

Waring, J. N.R. Baker, and G.J. C. Underwood. 2007. Responses of estuarine intertidal microphytobenthic algal assemblages to enhanced UV-B radiation. Global Change Biology 13: 1398–1413.

Zakaria, D., Lappin-Scott, H., Burton S., & Whitby, C. 2007. Bacterial diversity in soil enrichment cultures amended with 2 (2-methyl-4-chlorophenoxy) propionic acid (mecoprop). Environmental Microbiology, 9: 10, 2575-2587.